Biochemistry and Molecular Biology Software

Below are some useful links about Software on Biochemistry and Molecular Biology:

See also:

Argo - Software developed by the Broad Institute for visualizing and manually annotating whole genomes. Free for research and educational users

BioKin, Ltd. - Offers script-driven programming for data analysis in viral dynamics, enzyme kinetics, receptor binding and drug discovery screening. Includes demo download, technical support and contacts for consulting in Pullman, Washington.

Blue Tractor Software - Java based commercial software for DNA and Protein sequence analysis. Demo available.

DNA Sequencing Software - software to improve the quality of DNA sequencing traces collected on the ABI 3700 and 3730 DNA sequencers.

DoMix Scientific Software - Offers software for sequence alignment, phylogenetic tree visualization, contig assembly and sequence proof reading

EnzymeX - Free MacOS X program for molecular biologists that can be used to determine which restriction enzymes cut a DNA sequence. Includes list of all commercially available RE.

FinchTV - Free DNA sequencing chromatogram trace viewer. Runs on Window, MacOS X, Linux and Solaris. Uses QT library.

Insilico Biotechnology - Offering predictive software tools and services for metabolic engineering and drug discovery. Based in Germany.

JaMBW - Java based biologist's workbench by Luca I.G.Toldo.

Ludesi - Analysis software and service for 2D electrophoresis gels as tools for multivariate statistical analysis.

MacVector - Macintosh software which provide sequence editing, primer design, database searching, protein analysis, alignment, phylogeny, and other functions.

Mekentosj software - Free MacOS X programs for molecular biologists. Offers 4Peaks - a DNA sequencing trace viewer, iRNAi - RNAi design, and LabAssistant - lab timer/organizer.

Molecular Biology Software Links - Links to biological software for DNA sequencing, molecule modeling, polymerase chain reaction and taxonomy.

PeakTrace Basecaller - A new base caller for ABI DNA sequencers including the 377, 3700, 310, 3100, 3130 and 3730 models. Provides increases in read length of 20 to 100%.

Phenosystems - Offers the Gensearch software to locate and analyse potential mutation locations.

SoftZymics - Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, New Jersey.

StarBiochem - StarBiochem is an application that displays molecules from the Protein Data Bank. It allows users to explore fundamental biological research concepts, select parts of the molecule and control how the selected parts are displayed.

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